Identification and analysis of the acetylated status of poplar proteins reveals analogous N-terminal protein processing mechanisms with other eukaryotes.
Identifieur interne : 002645 ( Main/Exploration ); précédent : 002644; suivant : 002646Identification and analysis of the acetylated status of poplar proteins reveals analogous N-terminal protein processing mechanisms with other eukaryotes.
Auteurs : Chang-Cai Liu [République populaire de Chine] ; Hang-Yong Zhu ; Xiu-Mei Dong ; De-Li Ning ; Hong-Xia Wang ; Wei-Hua Li ; Chuan-Ping Yang ; Bai-Chen WangSource :
- PloS one [ 1932-6203 ] ; 2013.
Descripteurs français
- KwdFr :
- Acétylation (MeSH), Alignement de séquences (MeSH), Amidohydrolases (métabolisme), Aminopeptidases (classification), Aminopeptidases (génétique), Aminopeptidases (métabolisme), Arabidopsis (génétique), Arabidopsis (métabolisme), Données de séquences moléculaires (MeSH), Génome végétal (MeSH), Matrices de scores (MeSH), Maturation post-traductionnelle des protéines (MeSH), N-terminal acetyltransferases (métabolisme), Phylogenèse (MeSH), Populus (enzymologie), Populus (génétique), Populus (métabolisme), Protéines végétales (métabolisme), Séquence d'acides aminés (MeSH).
- MESH :
- classification : Aminopeptidases.
- enzymologie : Populus.
- génétique : Aminopeptidases, Arabidopsis, Populus.
- métabolisme : Amidohydrolases, Aminopeptidases, Arabidopsis, N-terminal acetyltransferases, Populus, Protéines végétales.
- Acétylation, Alignement de séquences, Données de séquences moléculaires, Génome végétal, Matrices de scores, Maturation post-traductionnelle des protéines, Phylogenèse, Séquence d'acides aminés.
English descriptors
- KwdEn :
- Acetylation (MeSH), Amidohydrolases (metabolism), Amino Acid Sequence (MeSH), Aminopeptidases (classification), Aminopeptidases (genetics), Aminopeptidases (metabolism), Arabidopsis (genetics), Arabidopsis (metabolism), Genome, Plant (MeSH), Molecular Sequence Data (MeSH), N-Terminal Acetyltransferases (metabolism), Phylogeny (MeSH), Plant Proteins (metabolism), Populus (enzymology), Populus (genetics), Populus (metabolism), Position-Specific Scoring Matrices (MeSH), Protein Processing, Post-Translational (MeSH), Sequence Alignment (MeSH).
- MESH :
- chemical , classification : Aminopeptidases.
- chemical , genetics : Aminopeptidases.
- chemical , metabolism : Amidohydrolases, Aminopeptidases, N-Terminal Acetyltransferases, Plant Proteins.
- enzymology : Populus.
- genetics : Arabidopsis, Populus.
- metabolism : Arabidopsis, Populus.
- Acetylation, Amino Acid Sequence, Genome, Plant, Molecular Sequence Data, Phylogeny, Position-Specific Scoring Matrices, Protein Processing, Post-Translational, Sequence Alignment.
Abstract
BACKGROUND
The N-terminal protein processing mechanism (NPM) including N-terminal Met excision (NME) and N-terminal acetylation (N(α)-acetylation) represents a common protein co-translational process of some eukaryotes. However, this NPM occurred in woody plants yet remains unknown.
METHODOLOGY/PRINCIPAL FINDINGS
To reveal the NPM in poplar, we investigated the N(α)-acetylation status of poplar proteins during dormancy by combining tandem mass spectrometry with TiO2 enrichment of acetylated peptides. We identified 58 N-terminally acetylated (N(α)-acetylated) proteins. Most proteins (47, >81%) are subjected to N(α)-acetylation following the N-terminal removal of Met, indicating that N(α)-acetylation and NME represent a common NPM of poplar proteins. Furthermore, we confirm that poplar shares the analogous NME and N(α)-acetylation (NPM) to other eukaryotes according to analysis of N-terminal features of these acetylated proteins combined with genome-wide identification of the involving methionine aminopeptidases (MAPs) and N-terminal acetyltransferase (Nat) enzymes in poplar. The N(α)-acetylated reactions and the involving enzymes of these poplar proteins are also identified based on those of yeast and human, as well as the subcellular location information of these poplar proteins.
CONCLUSIONS/SIGNIFICANCE
This study represents the first extensive investigation of N(α)-acetylation events in woody plants, the results of which will provide useful resources for future unraveling the regulatory mechanisms of N(α)-acetylation of proteins in poplar.
DOI: 10.1371/journal.pone.0058681
PubMed: 23536812
PubMed Central: PMC3594182
Affiliations:
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China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Forest Genetics and Tree Breeding (Northeast Forestry University), Northeast Forestry University, Harbin, Heilongjiang</wicri:regionArea><wicri:noRegion>Heilongjiang</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Hang Yong" sort="Zhu, Hang Yong" uniqKey="Zhu H" first="Hang-Yong" last="Zhu">Hang-Yong Zhu</name></author><author><name sortKey="Dong, Xiu Mei" sort="Dong, Xiu Mei" uniqKey="Dong X" first="Xiu-Mei" last="Dong">Xiu-Mei Dong</name></author><author><name sortKey="Ning, De Li" sort="Ning, De Li" uniqKey="Ning D" first="De-Li" last="Ning">De-Li Ning</name></author><author><name sortKey="Wang, Hong Xia" sort="Wang, Hong Xia" uniqKey="Wang H" first="Hong-Xia" last="Wang">Hong-Xia Wang</name></author><author><name sortKey="Li, Wei Hua" sort="Li, Wei Hua" uniqKey="Li W" first="Wei-Hua" last="Li">Wei-Hua Li</name></author><author><name 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(MeSH)</term><term>Plant Proteins (metabolism)</term><term>Populus (enzymology)</term><term>Populus (genetics)</term><term>Populus (metabolism)</term><term>Position-Specific Scoring Matrices (MeSH)</term><term>Protein Processing, Post-Translational (MeSH)</term><term>Sequence Alignment (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Acétylation (MeSH)</term><term>Alignement de séquences (MeSH)</term><term>Amidohydrolases (métabolisme)</term><term>Aminopeptidases (classification)</term><term>Aminopeptidases (génétique)</term><term>Aminopeptidases (métabolisme)</term><term>Arabidopsis (génétique)</term><term>Arabidopsis (métabolisme)</term><term>Données de séquences moléculaires (MeSH)</term><term>Génome végétal (MeSH)</term><term>Matrices de scores (MeSH)</term><term>Maturation post-traductionnelle des protéines (MeSH)</term><term>N-terminal acetyltransferases (métabolisme)</term><term>Phylogenèse (MeSH)</term><term>Populus (enzymologie)</term><term>Populus (génétique)</term><term>Populus (métabolisme)</term><term>Protéines végétales (métabolisme)</term><term>Séquence d'acides aminés (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Aminopeptidases</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Aminopeptidases</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Amidohydrolases</term><term>Aminopeptidases</term><term>N-Terminal Acetyltransferases</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Aminopeptidases</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" 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séquences</term><term>Données de séquences moléculaires</term><term>Génome végétal</term><term>Matrices de scores</term><term>Maturation post-traductionnelle des protéines</term><term>Phylogenèse</term><term>Séquence d'acides aminés</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>The N-terminal protein processing mechanism (NPM) including N-terminal Met excision (NME) and N-terminal acetylation (N(α)-acetylation) represents a common protein co-translational process of some eukaryotes. However, this NPM occurred in woody plants yet remains unknown.</p></div><div type="abstract" xml:lang="en"><p><b>METHODOLOGY/PRINCIPAL FINDINGS</b></p><p>To reveal the NPM in poplar, we investigated the N(α)-acetylation status of poplar proteins during dormancy by combining tandem mass spectrometry with TiO2 enrichment of acetylated peptides. We identified 58 N-terminally acetylated (N(α)-acetylated) proteins. Most proteins (47, >81%) are subjected to N(α)-acetylation following the N-terminal removal of Met, indicating that N(α)-acetylation and NME represent a common NPM of poplar proteins. Furthermore, we confirm that poplar shares the analogous NME and N(α)-acetylation (NPM) to other eukaryotes according to analysis of N-terminal features of these acetylated proteins combined with genome-wide identification of the involving methionine aminopeptidases (MAPs) and N-terminal acetyltransferase (Nat) enzymes in poplar. The N(α)-acetylated reactions and the involving enzymes of these poplar proteins are also identified based on those of yeast and human, as well as the subcellular location information of these poplar proteins.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS/SIGNIFICANCE</b></p><p>This study represents the first extensive investigation of N(α)-acetylation events in woody plants, the results of which will provide useful resources for future unraveling the regulatory mechanisms of N(α)-acetylation of proteins in poplar.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23536812</PMID><DateCompleted><Year>2013</Year><Month>12</Month><Day>27</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>3</Issue><PubDate><Year>2013</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>Identification and analysis of the acetylated status of poplar proteins reveals analogous N-terminal protein processing mechanisms with other eukaryotes.</ArticleTitle><Pagination><MedlinePgn>e58681</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0058681</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The N-terminal protein processing mechanism (NPM) including N-terminal Met excision (NME) and N-terminal acetylation (N(α)-acetylation) represents a common protein co-translational process of some eukaryotes. However, this NPM occurred in woody plants yet remains unknown.</AbstractText><AbstractText Label="METHODOLOGY/PRINCIPAL FINDINGS" NlmCategory="RESULTS">To reveal the NPM in poplar, we investigated the N(α)-acetylation status of poplar proteins during dormancy by combining tandem mass spectrometry with TiO2 enrichment of acetylated peptides. We identified 58 N-terminally acetylated (N(α)-acetylated) proteins. Most proteins (47, >81%) are subjected to N(α)-acetylation following the N-terminal removal of Met, indicating that N(α)-acetylation and NME represent a common NPM of poplar proteins. Furthermore, we confirm that poplar shares the analogous NME and N(α)-acetylation (NPM) to other eukaryotes according to analysis of N-terminal features of these acetylated proteins combined with genome-wide identification of the involving methionine aminopeptidases (MAPs) and N-terminal acetyltransferase (Nat) enzymes in poplar. The N(α)-acetylated reactions and the involving enzymes of these poplar proteins are also identified based on those of yeast and human, as well as the subcellular location information of these poplar proteins.</AbstractText><AbstractText Label="CONCLUSIONS/SIGNIFICANCE" NlmCategory="CONCLUSIONS">This study represents the first extensive investigation of N(α)-acetylation events in woody plants, the results of which will provide useful resources for future unraveling the regulatory mechanisms of N(α)-acetylation of proteins in poplar.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Chang-Cai</ForeName><Initials>CC</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Forest Genetics and Tree Breeding (Northeast Forestry University), Northeast Forestry University, Harbin, Heilongjiang, China.</Affiliation></AffiliationInfo></Author><Author 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DateType="Electronic"><Year>2013</Year><Month>03</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.3.1.88</RegistryNumber><NameOfSubstance UI="D063206">N-Terminal Acetyltransferases</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.4.11.-</RegistryNumber><NameOfSubstance UI="D000626">Aminopeptidases</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.5.-</RegistryNumber><NameOfSubstance UI="D000581">Amidohydrolases</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.5.1.88</RegistryNumber><NameOfSubstance UI="C084507">peptide 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MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D063206" MajorTopicYN="N">N-Terminal Acetyltransferases</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" 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IdType="pubmed">16603408</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><noCountry><name sortKey="Dong, Xiu Mei" sort="Dong, Xiu Mei" uniqKey="Dong X" first="Xiu-Mei" last="Dong">Xiu-Mei Dong</name><name sortKey="Li, Wei Hua" sort="Li, Wei Hua" uniqKey="Li W" first="Wei-Hua" last="Li">Wei-Hua Li</name><name sortKey="Ning, De Li" sort="Ning, De Li" uniqKey="Ning D" first="De-Li" last="Ning">De-Li Ning</name><name sortKey="Wang, Bai Chen" sort="Wang, Bai Chen" uniqKey="Wang B" first="Bai-Chen" last="Wang">Bai-Chen Wang</name><name sortKey="Wang, Hong Xia" sort="Wang, Hong Xia" uniqKey="Wang H" first="Hong-Xia" last="Wang">Hong-Xia Wang</name><name sortKey="Yang, Chuan Ping" sort="Yang, Chuan Ping" uniqKey="Yang C" first="Chuan-Ping" last="Yang">Chuan-Ping Yang</name><name sortKey="Zhu, Hang Yong" sort="Zhu, Hang Yong" uniqKey="Zhu H" first="Hang-Yong" last="Zhu">Hang-Yong Zhu</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Liu, Chang Cai" sort="Liu, Chang Cai" uniqKey="Liu C" first="Chang-Cai" last="Liu">Chang-Cai Liu</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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